Platform | File |
---|---|
Linux (x86_64) | rosdet_linux.tar.gz (test version) |
Apple Mac (i386, PPC) | rosdet_mac.dmg (test version) |
>> ./rosdet -e exp.txt -l label.txt -o out.txt >> significant level for gene pairs to be selected: (enter a significant level, for example 0.001) >> number of gene pairs to be output: (enter a number of gene pairs, for example 100)The result of the input ("exp.txt", "label.txt") is output in "out.txt".
data type expression: label: |
size (rows × columns) #genes × n 1 × n |
delimiters white space / tab white space / tab |
sample "exp.txt" "label.txt" |
1st column: rank of gene pair 2nd column: score of WCOR (=c|r1-r2|) 3rd column: log10(p-value) of ECOR 4th column: index of gene1 (=1, 2, ..., #Genes-1) 5th column: index of gene2 (=2, 3, ..., #Genes) 6th column: biweight midcorrelation for class 1(label=1) 7th column: biweight midcorrelation for class 2(label=0) 8th column: our weight c in WCOR