List of Poster Presentations
| No. | T i t l e
|
A u t h o r (s) |
| S01 | KEGG PEPTIDE: A Database for Peptide Structures | Michihiro Araki¹, Toshiaki Katayama¹, Yuriko Matsuura¹, Minoru Kanehisa¹, ² (¹ U. Tokyo, ² Kyoto U.) |
| S02 | A Mathematical Model of the JAK/Stat1 Signal Transduction Pathway | Stephan Beirer¹, Thomas Meyer², Uwe Vinkemeyer², Thomas Höfer¹ (¹Humboldt U., ²Forschungsinstitut für Molekulare Pharmakologie) |
| S03 | Period Distributions of Intracellular Ca2+ Oscillations | Martin Falcke (Hahn-Meitner-Inst.) |
| S04 | Protein Sequence-Structure Alignment Using 3D-HMM | Masashi Fujita, Hiroyuki Toh, Minoru Kanehisa (Kyoto U.) |
| S05 | Modeling Approaches in Lipid Metabolism | Katrin Hafez, Jens-Georg Reich (MDC for Molecular Medicine) |
| S06 | Minimal Sets of External Compounds in Metabolic Networks | Thomas Handorf, Oliver Ebenhöh (Humboldt U.) |
| S07 | Predicting Transcription Factor Binding Sites Using a Bayesian Allocation Method | Dustin T. Holloway, Charles DeLisi (Boston U.) |
| S08 | Peptide Variation Governing Identity of Organisms | Wataru Honda, Shuichi Kawashima, Minoru Kanehisa (Kyoto U.) |
| S09 | Comparative Genome Analysis of Glycan Transporters | Yoshinobu Igarashi, Shin Kawano, Susumu Goto, Minoru Kanehisa (Kyoto U.) |
| S10 | Genomic Analysis of Regulatory Regions in Organelle DNA | Ruy Jauregui Sandoval, Masumi Itoh, Minoru Kanehisa (Kyoto U.) |
| S11 | Prediction of Glycan Structures from the Glycan Related Microarray Expression Profiles | Shin Kawano, Yasushi Okuno, Kosuke Hashimoto, Takashi Miyama, Susumu Goto, Minoru Kanehisa (Kyoto U.) |
| S12 | A Maximum Edge-weight Clique Finding Algorithmic Approach for Solving Protein Side-chain Positioning Problem | Dukka Bahadur K.C., Etsuji Tomita, Suzuki Junichi, Tatsuya Akutsu (Kyoto U.) |
| S13 | Comparative Analysis of Transcriptional Regulation in Eukaryotic Cell Cycles | Koji Ota, Susumu Goto, Minoru Kanehisa (Kyoto U.) |
| S14 | Zipf Law and Distribution of Paralog Families | Lev B. Levitin, Dmitriy Leyfer (Boston U.) |
| S15 | Reconstruction of Metabolic Pathways for Malaria Parasite Plasmodium Falciparum | Vachiranee Limviphuvadh, Masahiro Hattori, Minoru Kanehisa (Kyoto U.) |
| S16 | Successful Lateral Transfer Requires Codon Usage Compatibility between Foreign Genes and Recipient Genomes | Arturo Medrano-Soto¹, Gabriel Moreno-Hagelsieb¹,², Pablo Vinuesa¹, J. Andres Christen³, Julio Collado-Vides¹ (¹UNAM, ²Cornell Theory Center, ³CIMAT) |
| S17 | Study on the Clustering Coefficients in Metabolic Network Using a Hierarchical Framework | Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu (Kyoto U.) |
| S18 | Application of Oligomer Interface Prediction Method in Class A G-protein Coupled Receptors | Wataru Nemoto¹,², Hiroyuki Toh¹ (¹Kyoto U., ²Nara Inst. Sci. Tech.) |
| S19 | Genome-wide Distribution of Bilin-binding GAF Domains | Shinobu Okamoto¹, Masayuki Ohmori², Minoru Kanehisa¹ (¹Kyoto U., ²Saitama U.) |
| S20 | Integration of Biological Features of Multiple Genomes - The Construction of "Genome Indices" database - | Shujiro Okuda, Akiyasu C. Yoshizawa, Yuki Moriya, Masumi Itoh, Susumu Goto, Minoru Kanehisa (Kyoto U.) |
| S21 | Modeling Biological Activities of Chemical Compounds: Kernel Methods for Structure Activity Relationship | Jean-Luc Perret, Yoshinobu Igarashi, Minoru Kanehisa (Kyoto U.) |
| S22 | Determining an Optimal Scoring Function for Protein Complex Predictions | Brian G Pierce, Zhiping Weng (Boston U.) |
| S23 | Determination of Force Field Parameters for the Octahedral Iron Complex in Lipoxygenase | Jan Saam, Hermann Georg Holzhütter (Charite Universitätsmedizin Berlin) |
| S24 | Finding Characteristic Sequence Patterns for Alternative Splicing in Human Genomic DNA | Hiroki Sakai¹, Osamu Maruyama², Hiroo Murakami³, Nobuyoshi Sugaya³, Akira Imaizumi³, Makihiko Sato4, Sachiyo Aburatani³, Katsuhisa Horimoto³, Minoru Kanehisa¹ (¹Kyoto U., ²Kyushu U., ³U. Tokyo, 4Maebashi Inst. Tech.) |
| S25 | Decoding of Calcium Oscillations by Phosphorylation Cycles | Carlos Salazar, Antonio Politi, Thomas Höfer (Humboldt U.) |
| S26 | Enhancing Gapless Threading | Tobias Schmidt-Goenner, Ernst Walter Knapp (Free U. Berlin) |
| S27 | Stochastic Modelling of Influenza Virus Fusion | Susanne Schreiber¹, Kai Ludwig², Herman-Georg Holzhütter¹, Andreas Herrmann¹ (¹ Humboldt U., ² Free U. Berlin) |
| S28 | Glycolytic Oscillations in Spatially Ordered Interacting Cells | Jana Schütze, Reinhart Heinrich (Humboldt U.) |
| S29 | Combining Kinetics and Network-based Pathway Analysis | Jean-Marc Schwartz, Minoru Kanehisa (Kyoto U.) |
| S30 | Bifurcation Analysis of Regulatory Modules in Cell Biology | Maciej Swat¹, Alexander Kel², Wojciech Swat³, Hanspeter Herzel¹ (¹Humboldt U., ²BIOBASE, ³Washington U.) |
| S31 | Application of Standard Gibbs Free Energy Changes of Reactions to metabolic pathway computation | Michihiro Tanaka, Susumu Goto, Minoru Kanehisa (Kyoto U.) |
| S32 | ChemRuby: An open source library for integrating bioinformatics and cheminformatics | Nobuya Tanaka, Susumu Goto, Minoru Kanehisa (Kyoto U.) |
| S33 | A New Probabilistic Model for Glycans | Nobuhisa Ueda, Kiyoko F. Aoki, Atsuko Yamaguchi, Minoru Kanehisa, Tatsuya Akutsu, Hiroshi Mamitsuka (Kyoto U.) |
| S34 | Interspike Interval Distribution: a Sensitive Instrument for Diagnostic of Neuronal Dynamics | Tatiana Verechtchaguina, Lutz Schimansky-Geier, Igor M. Sokolov (Humboldt U.) |
| S35 | Physiological Characteristics of Nestin-Positive Progenitor Cells in Adult Mouse Hippocampus | Li-Ping Wang¹, Gerd Kempermann¹,², Helmut Kettenmann¹ (¹MDC for Molecular Medicine, ²Humboldt U.) |
| S36 | Identification of Correlating Conserved Regions on HIV Proteins by Mutation Analysis | Yaoyu E. Wang, Charles DeLisi (Boston U.) |
| S37 | Prediction of Protein Network and Functions for Yeast Using Multiple Types of Genomic Data | Yoshihiro Yamanishi, Tetsuya Sato, Jean-Phillipe Vert, Susumu Goto, Minoru Kanehisa (Kyoto U.) |
| S38 | Prediction and Comparison of Coiled-Coil Proteins in Multiple Genomes | Akiyasu C. Yoshizawa¹, Shujiro Okuda¹, Masumi Itoh¹,Toshiaki Katayama², Shuichi Kawashima¹, Minoru Kanehisa¹,² (¹Kyoto U. ² U. Tokyo) |
| S39 | Enzyme-malfunctioning in the Light of Pathway Analysis An Example from Nucleotide metabolism | Ionela Zevedei-Oancea (Humboldt U.) |