アブストラクト
| Date | 2:00pm Sep 02, 2019 |
| Speaker | Tom Delmont Researcher, Univ. Paris-Sud, France Tom Delmont is a young powerful scientist in the field of microbial genomics and recently started to take part in the Tara Oceans Consortium. |
| Title | Genome-resolved metagenomics and comparative genomics applied to TARA Oceans |
| Abstract |
This seminar will describe (1) the platform anvi'o (concepts only), (2)
how it can be used to perform genome-resolved metagenomics on TARA
Oceans using various methodologies compatible with different targets
(e.g., domains of life versus lineages of giant viruses), (3) and how it
can be used to perform comparative genomic analyses of various microbial
lineages. - Delmont TO, Quince C, Shaiber A, Esen ÔC, Lee ST, Rappé MS, McLellan SL, Lücker S, Eren AM. Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes. Nat Microbiol. 2018 Jul;3(7):804-813. doi: 10.1038/s41564-018-0176-9. - Delmont TO, Eren AM. Linking pangenomes and metagenomes: the Prochlorococcus metapangenome. PeerJ. 2018 Jan 25;6:e4320. doi: 10.7717/peerj.4320. eCollection 2018. PubMed PMID: 29423345 - Delmont TO, Eren AM. Simulations predict microbial responses in the environment? This environment disagrees retrospectively. Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):E8947-E8949. doi: 10.1073/pnas.1712186114. Epub 2017 Oct 10. PubMed PMID: 29073088 |