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バイオインフォマティクスセミナーシリーズ
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会場−京都大学化学研究所バイオインフォマティクスセンター CB-207
FY2024 (Apr 2024〜 Mar 2025)
| Date |
Speaker |
Affiliation |
Title |
| Mar 11, Tue |
14:00 |
Masaharu Takemura |
Tokyo University of Science |
Probing the Secrets of Giant Viruses through the Behavior of Amoebas [abstract] |
| Feb 25, Tue |
14:00 |
Kiyoko F. Aoki-Kinoshita |
Soka University |
Integrating Glycoscience Data to Characterize the Extended Central Dogma [abstract] |
| Feb 13, Thu |
14:00 |
Ikuo Uchiyama |
National Institutes of Natural Sciences |
Construction of comprehensive ortholog database for comparative analysis of microbial genomes [abstract] |
| Feb 12, Wed |
14:00 |
Takuji Yamada |
Institute of Science Tokyo |
Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer [abstract] |
| Feb 4, Tue |
15:00 |
Ryo Kuroiwa |
National Institute of Informatics |
Domain-Independent Dynamic Programming for Combinatorial Optimization [abstract] |
| Jan 21, Tue |
14:00 |
Junna Kawasaki |
Chiba University |
Bioinformatics approaches to assessing the risks of zoonotic viruses [abstract] |
| Jan 21, Tue |
14:00 |
Jumpei Ito |
The University of Tokyo |
Predicting viral phenotypes, fitness, and evolution [abstract] |
| Dec 17, Tue |
11:00 |
Yuji Shinano |
Zuse Institute Berlin |
Progress on highly parallel ensemble solvers [abstract] |
| Sep 25, Wed |
14:00 |
Atsushi Mochizuki |
Kyoto University |
Biological functions and functional modules originated in structure of chemical reaction networks [abstract] |
| Sep 20, Fri |
14:00 |
Pietro Gerletti |
Robert Koch Institute and Free University Berlin |
SIMPLICITY: an agent-based, multi-scale mathematical model to study SARS-CoV-2 intra- and between-host evolution [abstract] |
| Sep 06, Fri |
15:00 |
Edda Klipp |
Humboldt-Universität zu Berlin |
Signaling in time and space [abstract] |
| Sep 06, Fri |
14:00 |
Rune Linding |
Humboldt-Universität zu Berlin |
Systematic Discovery of Mechanistic Cell Signaling Networks in Cancers with Theory Informed Machine Learning [abstract] |
| Jul 31, Wed |
14:00 |
Han Zhang |
Nankai University, China |
Deep Learning Model for Single-cell Proteomics Embedding and
Multi-omics integration: scPROTEIN, scMHNN and BERMAD [abstract] |
| Jun 11, Tue |
14:00 |
Tsung Fei Khang |
University of Malaya, Malaysia |
SIEVE: One-stop differential expression, variability, and skewness analyses using RNA-Seq data [abstract] |
| Apr 25, Thu |
16:00 |
Wenyu Li |
College of Artificial Intelligence, Nankai University, China |
Indirect Shared Control Through Non-Zero Sum Differential Game for Human-Vehicle Cooperative Driving [abstract] |
FY2023 (Apr 2023〜 Mar 2024)
| Date |
Speaker |
Affiliation |
Title |
| Feb 27, Tue |
14:00 |
David Demory |
French National Centre for Scientific Research (CNRS), France |
Dynamics and impacts of marine viruses infecting phytoplankton [abstract] |
| Jan 30, Tue |
14:55 |
Zhang Yue |
School of Computer Science, Guangdong Polytechnic Normal University, China |
Collaborative embedding learning via tensor integration for multi-view
clustering [abstract] |
| Jan 30, Tue |
14:00 |
Hongmin Cai |
School of Future Technology, South China University of Technology, China |
Unsupervised clustering methods and applications for genes, cells and tissues [abstract] |
| Jan 09, Tue |
15:00 |
Yayoi Natsume-Kitatani |
National Institutes of Biomedical Innovation, Health and Nutrition |
Hurdles in Drug Discovery and Expected Role of AI/ML: Drug Target Discovery and Prediction of Activity/Safety of Candidate Substances [abstract] |
| Dec 25, Mon |
14:00 |
Risa K Kawaguchi |
CiRA, Kyoto University |
Beyond Nature and Nurture: Does Stochastic Noise Change the Cellular Epigenetic Landscape? [abstract] |
| Nov 28, Tue |
11:00 |
Graziano Chesi |
The University of Hong Kong |
Exact LMI Conditions for Stability and L2 Gain Analysis of 2D Systems via Quadratically-Frequency-Dependent Lyapunov Functions [abstract] |
| Nov 17, Fri |
14:00 |
Yuya Sato |
National Institute of Advanced Industrial Science and Technology |
Emergence of unique biological functions triggered by microbe-driven interspecific relationships [abstract] |
| Nov 16, Thu |
14:00 |
Wolfram Weckwerth |
University of Vienna |
Multiomics, AI and data-driven inverse modelling - from environmental sciences to molecular medicine [abstract] |
| Nov 13, Mon |
14:00 |
Colin de la Higuera |
University of Nantes |
Ethics and AI: issues in Education [abstract] |
| Aug 01, Tue |
14:00 |
Chun-Yu Lin |
National Yang Ming Chiao Tung University, Taiwan |
Single-sample networks for deciphering individual features in disease [abstract] |
| Jul 25, Tue |
14:00 |
Shinichi Sunagawa |
ETH Zürich, Switzerland |
The ocean microbiome as a treasure trove for novel taxa, enzymes and
bioactive compounds [abstract] |
| Jul 07, Fri |
10:30 |
Joshua Weitz |
Georgia Institute of Technology, USA |
Marine Viral Dynamics: Lessons from an Imperfect Predator [abstract] |
| Jun 28, Wed |
14:00 |
Daisuke Kihara |
Purdue University, USA |
Building and Validating Biomolecular Structure Models for cryo-EM Maps Using Deep Learning [abstract] |
FY2022 (Apr 2022〜 Mar 2023)
| Date |
Speaker |
Affiliation |
Title |
| Mar 20, Mon |
10:30am |
Pascal Hingamp |
Aix-Marseille University, France |
Environmental genomics: bioinformatics methods to estimate biodiversity from metagenomes [abstract] |
| Jan 31, Tue |
2:00pm |
Yang Lou |
Osaka University |
Evaluating the Network Robustness: A Convolutional Neural Network Approach [abstract] |
| Jan 23, Mon |
2:00pm |
Hideo Matsuda |
Osaka University |
Single-Cell Trajectory and Imaging Analyses of Mouse Inflammatory Response[abstract] |
| Oct 26, Wed |
2:00pm |
Florian Fuchs |
Sony AI |
Outracing champion Gran Turismo drivers with deep reinforcement learning[abstract] |
| Oct 24, Mon |
10:00am |
Samuel Chaffron |
CNRS/Nante University |
Community network models to reveal marine plankton systems ecology[abstract] |
| July 19, Tue |
2:00pm |
Romain Blanc-Mathieu |
Université Grenoble Alpes, CEA |
A structural classification for plant transcription factors[abstract] |
| July 14, Thu |
2:00pm |
Jiangning Song |
Monash University, Australia |
Artificial intelligence to explore multi-modality molecular data and accelerate biomedical knowledge discovery [abstract] |
| June 23, Thu |
2:00pm |
Lionel Guidi |
CNRS, Sorbonne University |
The Biological Carbon Pump from Genes to the Ecosystem[abstract] |
| June 22, Wed |
10:00am |
Morgan Gaia |
Genoscope, CEA, Every, France |
The viral eukaryogenesis hypothesis in the Tree of Life[abstract] |
| May 18, Wed |
2:00pm |
Keita Iida |
Osaka University |
Clustering single-cell and spatial transcriptomes through multifaceted biological aspects[abstract] |
| Apr 12, Tue |
2:00pm |
Edda Klipp |
Humboldt University of Berlin |
Mathematical modeling of signaling networks in time and space [abstract] |
会場−京都大学化学研究所バイオインフォマティクスセンター CB-207
|
FY2021 (Apr 2021〜 Mar 2022)
| Date |
Speaker |
Affiliation |
Title |
| Mar 11, Fri Onsite/online hybrid |
4:00pm |
Yasutaka Kato |
STJ Advisors Group Limited |
Work & Private Life ~3 years post graduation from Ogata Lab.~ [abstract] |
| Nov 24, Wed Onsite/online hybrid |
10:45am |
Takashi Ishida |
Department of Computer Science, School of Computing, Tokyo Institute of Technology |
Deep learning for prediction and analysis of protein structures [abstract] |
会場−京都大学化学研究所バイオインフォマティクスセンター CB-207
|
FY2020 (Apr 2020〜 Mar 2021)
| Date |
Speaker |
Affiliation |
Title |
| Mar 30, Tue |
2:00pm |
Mariko Okada |
Institute for Protein Research, Osaka University |
Mathematical modeling of cancer signaling networks for patient classification [abstract] |
| Jul 16, Thu Online talk |
2:00pm |
Matteo Convertino |
Associate Professor, Nexus Group, PI,
Faculty of Information Science and Technology,
Gi-CoRE Station for Big Data & Cybersecurity,
Hokkaido University |
Ecosystem Nexus: from E.coli to Ocean Bacterioplankton Collective Patterns [abstract] |
| Jul 07, Tue Online talk |
2:00pm |
Yusuke Okazaki |
Bioproduction Research Institute, National Institute of Advanced
Industrial Science and Technology |
Microbial ecology in deep freshwater lakes [abstract] |
会場−京都大学化学研究所バイオインフォマティクスセンター CB-207
|
FY2019 (Apr 2019〜 Mar 2020)
| Date |
Speaker |
Affiliation |
Title |
| Mar 13, Fri Cancelled |
2:00pm |
Matteo Convertino |
Associate Professor, Nexus Group, PI,
Faculty of Information Science and Technology,
Gi-CoRE Station for Big Data & Cybersecurity,
Hokkaido University |
Ecosystem Nexus: from E.coli to Ocean Bacterioplankton Collective Patterns [abstract] |
| Mar 09, Mon |
2:00pm |
Tomas Pluskal |
Postdoctoral Fellow, Whitehead Institute for Biomedical Research, USA
|
Elucidation of the biosynthetic pathway of psychoactive kavalactones in kava using de novo transcriptomics and metabolomics [abstract] |
| Mar 06, Fri Cancelled |
2:00pm |
Matthieu Legendre |
Researcher, CNRS/Aix-Marseille University, France |
The DNA Methylation Landscape of Giant Viruses [abstract] |
| Feb 19, Thu Cancelled |
2:00pm |
Samuel Chaffronl |
Researcher, CNRS/Université de Nantes, France |
Community networks reveal the structuring of plankton in the global ocean [abstract] |
| Feb 07, Fri |
2:00pm |
Etsuji Tomita |
Professor Emeritus, The Advanced Algorithms Research Laboratory, The University of Electro-Communications, Japan
|
The Maximum Clique Problem and Its Applications [abstract] |
| Jan 22, Wed |
2:00pm |
Jean-Philippe Vert |
Senior researcher at Google Brain in Paris,
Research professor at the Centre for Computational Biology at Mines
ParisTech. |
Computational analysis of tumour heterogeneity, from bulk to single-cell
genomics [abstract] |
| Jan 22, Wed |
10:30am |
Wing-Kin Sung |
Professor,
Department of Computer Science, School of Computing,
National University of Singapore
Senior Group Leader,
Genome Institute of Singapore |
Finding deletion, tandem duplication and virus integration using high-throughput sequencing data [abstract] |
| Nov 01, Fri |
2:00pm |
Matthew B. Sullivan |
Professor,
Ohio State University |
Viruses of microbes: lessons from the oceans, soils and humans [abstract] |
| Sep 19, Thu |
2:00pm |
Hiroto Saigo |
Associate Professor,
Faculty of Information Science and Electrical Engineering, Kyushu University |
Prediction models that consider variable interactions [abstract] |
| Sep 18, Wed |
2:00pm |
Jiangning Song |
Associate Professor and Group Leader,
Monash Biomedicine Discovery Institute (BDI),
Monash University, Australia |
DeepCleave: a deep learning-based approach and tool for more
accurate prediction of protease-specific cleavage sites [abstract] |
| Sep 05, Thu |
2:00pm |
Hongmin Cai |
Professor of School of Computer Science & Engineering
South China University of Technology, China |
Identification of gene-drug and multi-omics regulatory modules through
integrative analysis [abstract] |
| Sep 02, Mon |
2:00pm |
Tom Delmont |
Researcher, Univ. Paris-Sud, France |
Genome-resolved metagenomics and comparative genomics applied to TARA Oceans [abstract] |
| Jul 24, Wed |
2:00pm |
Gyorgy Bagdy |
Professor and Director of the Department of Pharmacodynamics, Semmelweis University, Hungary |
Gene-environment and gene-gene interactions: clues to the "missing heritability" enigma in major depression? [abstract] |
| Gabriella Juhasz |
Associate Professor, Semmelweis University, Hungary |
Environmental causes of depression [abstract] |
| Jul 23, Tue |
2:00pm |
Nigel Grimsley |
CNRS UMR 7232, BIOM, Avenue du Fontaulé, 66650 Banyuls-sur-Mer, France |
Prasinovirus infection is firstly furtive, then furious, but phytoplankton fight [abstract] |
| Jul 09, Tue |
2:00pm |
Ernst-Walter Knapp |
Professor of
Free
University of Berlin, Germany |
Statistics: ANOVA and more
[abstract] |
| May 28, Tue |
2:00pm |
Kunihiko Hiraishi |
Professor of School of Information Science,
Japan Advanced Institute of Science and Technology (JAIST) |
Formal Modeling and Its Applications to Bioinformatics
[abstract] |
| May 24, Fri |
11:00am |
Samuel Kaski |
Professor of Aalto University and director of Finnish Center for Artificial Intelligence
(FCAI), Finland |
Probabilistic Modelling with the Experts
[abstract] |
| May 21, Tue |
2:00pm |
Xiaoli Li |
Head of Data Analytics Department, principal scientist at Institute for Infocomm Research, A*STAR Singapore |
Computational Prediction of Drug-Target Interactions
[abstract] |
会場−京都大学化学研究所バイオインフォマティクスセンター CB-207
|
FY2018 (Apr 2018〜 Mar 2019)
| Date |
Speaker |
Affiliation |
Title |
| Feb 8, Fri |
2:00pm |
Luonan Chen |
Professor, Key Laboratory of Systems Biology, Chinese Academy of Sciences, China |
Network biomarker for disease diagnosis and dynamic network biomarker for disease prediction
[abstract] |
| Feb 1, Fri |
2:00pm |
Ryuichiro Nakato |
Assistant Professor, Institute for Quantitative Biosciences, The University of Tokyo |
Comprehensive epigenome characterization reveals the diverse transcriptional heterogeneity across human vascular endothelial cells
[abstract] |
| Oct 26, Fri |
2:00pm |
Stefan Haar |
Senior Researcher and Head of MExICo team, INRIA Saclay center, France |
Let's have a new update on Boolean Networks !
[abstract] |
| Oct 18, Thu |
2:00pm |
Susumu Goto |
Database Center for Life Science (DBCLS), Joint Support-Center for Data Science Research (DS Cetner), Research Organization of Information and Systems (ROIS)
Visiting Professor of the Institute for Chemical Research |
Life science database integration based on semantic web technology
[abstract] |
| Sep 25, Tue |
11:00am |
Jiangning Song |
Senior Research Fellow and Group Leader, Monash Biomedicine Discovery Institute (BDI), Monash University, Melbourne, Australia |
Harnessing the power of machine-learning techniques to address sequence classification problems in the era of biomedical big data
[abstract] |
| Sep 14, Fri |
2:00pm |
Samuel Chaffron |
CNRS Scientist, Laboratoire des Sciences du Num??rique de Nantes |
An eco-systems view of complex microbiomes
[abstract] |
| Aug 23, Thu |
2:00pm |
Roderic Guig?? |
Head of the Bioinformatics and Genomics Program. Center for Genomic Regulation (CRG) |
The molecular anatomy of the human body
[abstract] |
| Jul 26, Thu |
2:00pm |
Anne Kupczok |
Institute of General Microbiology, Kiel University, Kiel, Germany |
Evolutionary rate estimation for bacteriophages based on time series data sets
[abstract] |
| Jul 24, Tue |
2:00pm |
Dukka Bahadur KC |
Computational Science and Engineering Department North Carolina A&T State University Greensboro, NC, USA |
Computational prediction of post-translational modification sites
[abstract] |
| Jul 10, Tue |
2:00pm |
Peter Petschner |
MTA-SE Neuropsychopharmacology and Neurochemistry Research Group, Department of Pharmacodynamics, Semmelweis University, Hungary |
Complexity of environment-dependent genetic effects in major depression through the scope of 5-HTTLPR
[abstract] |
| May 25, Fri |
2:00pm |
Yuji Tomaru |
National Research Institute of Fisheries and Environment of Inland Sea (FEIS), Japan Fisheries Research and Education Agency (FRA), Japan |
Ecological studies on marine diatom and their infectious viruses
[abstract] |
| Apr 25, Wed |
2:00pm |
Adnan Sljoka |
Department of Informatics, School of Science and Technology, Kwansei Gakuin University, Japan |
Lifting the curtain: probing allostery and other biological secrets with high throughput rigidity analysis
[abstract] |
| Apr 24, Tue |
3:30pm |
Ruth-Anne Sandaa |
Marine Microbiology Group, Department of Biological Science, Bergen University, Norway |
Living with the enemy: virus-host relationship in the ocean
[abstract] |
| Apr 24, Tue |
2:00pm |
Masanori Shimono |
Graduate School of Medicine, Kyoto University, Japan (Hakubi/LEADER researcher) |
Connecting multi-scale networks in the brain
[abstract] |
会場−京都大学化学研究所バイオインフォマティクスセンター CB-207
|
FY2017 (Apr 2017〜 Mar 2018)
| Date |
Speaker |
Affiliation |
Title |
| Mar 8, Thu |
2:00pm |
Dr. Jean-Michel Claverie |
Structural & Genomic Information Lab.
Mediterranean Institute of Microbiology
Professor of Medicine (PU1/PH)- Genomics and Bioinformatics
Aix-Marseille University School of Medicine
|
1) ACD 2.0: new general purpose statistical tools 2) the challenge of annotating G+C rich giant virus genomes
[abstract] |
| Dec 18,Mon |
2:00pm |
Dr. Yingying Xu |
Postdoctoral fellow, HIIT (Helsinki Institute of Information
Technology), Finland
|
Inverse finite-size scaling for high-dimensional significance analysis
[abstract] |
| Nov 30,Thu |
2:00pm |
Jun Sese |
Team leader of AIST on machine learning (Visiting associate professor of Bioinformatics Center) |
Statistical significance of marker combinations: theory and applications
[abstract] |
| Nov 21,Tue |
1:30pm |
Limin Li |
Associate professor, Xi'an Jiaotong University |
Multi-view learning models and the application in cancer subtype discovery
[abstract] |
| Oct 19,Thu |
2:00pm |
Wim Hordijk |
Senior Fellow Konrad Lorenz Institute for Evolution and Cognition Research, Austria |
Autocatalytic Sets and the Origin of Life
[abstract] |
| Oct 13,Fri |
2:45pm |
Yuji Shinano |
Zuse Institute Berlin |
How to harness over a Million CPU Cores to Solve a Single Hard Mixed Integer Programming Problem on a Supercomputer
[abstract] |
| Oct 13,Fri |
2:00pm |
Stefan Vigerske |
GAMS, Zuse Institute Berlin |
MINLP Solver Technology
[abstract] |
| Sep 8,Fri |
3:00pm |
Jie Liang |
Professor, Department of Bioengineering,
University of Illinois at Chicago, USA |
Computational modeling of cellular fate: control of
stochastic networks and 3D chromsome folding
[abstract] |
| Aug 31,Thu |
2:00pm |
Fuyi Li |
Ph.D student Department of Biochemistry and Molecular Biology & Biomedicine Discovery Institute, Monash University, Australia |
PROSPERous: a bioinformatics tool for rapid, high-throughput prediction of potential cleavage sites of 90 proteases by combining multiple scoring functions and logistic regression
[abstract] |
| Aug 4,Fri |
2:00pm |
Hsiuying Wang |
Professor, Institute of Statistics, National Chiao Tung University, Taiwan |
Anti-NMDA Receptor Encephalitis and Vaccination
[abstract] |
| Jul 21,Fri |
2:00pm |
Kentaro Tomii |
Intelligent Bioinformatics Research Team, Artificial Intelligence Research Center, Advanced Industrial Science and Technology (AIST) |
A novel amino acid substitution matrix for identifying distantly related proteins
[abstract] |
| Jul 6,Thu |
2:00pm |
Kazuhiro Takemoto |
Associate Professor
Department of Bioscience and Bioinformatics,
Kyushu Institute of Technology, Japan |
Stability of ecological communities: A network perspective
[abstract] |
| Apr 14,Fri |
2:00pm |
Nicolas Wicker |
Professor, Lille 1 University, France |
Multidimensional fitting and projection under pairwise distance control
[abstract] |
| Apr 10,Mon |
2:00pm |
Khoat Than |
Head of Data Science Laboratory, School of Information and Communication Technology, Hanoi University of Science and Technology |
Probabilistic Topic Modeling for Discovering Hidden Semantics from Massive Data
[abstract] |
会場−京都大学化学研究所バイオインフォマティクスセンター CB-207
|
FY2016 (Apr 2016〜 Mar 2017)
| Date |
Speaker |
Affiliation |
Title |
| Feb 28,Tue |
2:00pm |
Kazuki Izawa |
PhD student, Tokyo Institute of Technology, Japan |
Endomicrobium endosymbionts of termite-gut protists have functional defense systems
against bacteriophages
[abstract] |
| Feb 24,Fri |
2:00pm |
Einoshin Suzuki |
Professor, Kyushu University, Japan |
Recovering a Partial Decision List from Noisy Data and
an Approximate Theory Based on Minimum Encoding
[abstract] |
| Feb 2,Thu |
2:30pm |
Satoshi Hiraoka |
PhD Student, Tokyo University, Japan |
Bioinformatic Analyses Reveal Microbial Adaptation to Environmental Changes and Transport across Sea, Land, and Sky
[abstract] |
| Feb 2,Thu |
2:00pm |
Yohei Kumagai |
PhD Student, Tokyo University, Japan |
Different adaptive strategies of photoheterotrophic and heterotrophic marine Flavobacteria
[abstract] |
| Dec 22, Thu |
2:00pm |
Hisashi Endo |
Postdoctoral Researcher, Hokkaido University, Japan |
Contrasting biogeography and diversity patterns between diatoms and haptophytes in the central Pacific Ocean
[abstract] |
| Dec 13, Tue |
11:00am |
Andrei Zinovyev |
Research Engineer, Institut Curie, France |
The shortest path is not the one you know: application of biological networks in precision oncology research
[abstract] |
| Nov 30, Wed |
2:00pm |
Jiangning Song |
Research Fellow and team leader, Monash University, Australia |
Systematic identification of secreted effector proteins of
bacterial secretion system IV: a bioinformatics study
[abstract] |
| Nov 24, Wed |
2:30pm |
M. Michael Gromiha |
Associate Professor, Indian Institute of Technology Madras, India |
Protein interactions: Integrating computational methods and experimental data for understanding the binding specificity
[abstract] |
| Nov 16, Wed |
2:00pm |
Dušanka Janežič |
Professor, University of Primorska, Slovenia |
Protein Binding Sites Dynamics in Drug Discovery
[abstract] |
| Oct 11, Tue |
2:00pm |
Kin Fai Au |
Assistant Professor, University of Iowa, USA |
Transcriptome analysis at the gene isoform level using hybrid sequencing
[abstract] |
| Oct 4, Tue |
2:00pm |
Kimihito Ito |
Professor, Hokkaido University, Japan |
Combining Population Genetics of Pathogens and Epidemiology of Infectious Diseases
[abstract] |
| Sep 26, Mon |
3:15pm |
Ruth-Anne Sandaa |
Professor, Bergen University, Norway |
Marine viruses: small but important
[abstract] |
| Sep 2, Fri |
2:00pm |
Shangfeng Zhu |
Associate Professor, Fudan University, China |
DrugE-Rank: improving drug-target interaction prediction of new candidate drugs or targets by ensemble learning to rank
[abstract] |
| Aug 29, Mon |
2:00pm |
DeepMeSH and MeSHLabeler: Recent progress in large-scale MeSH indexing
[abstract] |
| Aug 4, Thu |
2:00pm |
Ernst-Walter Knapp |
Professor, Free University of Berlin, Germany |
ProPairs: A Data Set for Protein−Protein Docking
[abstract] |
| Jul 1, Fri |
2:00pm |
Yutaka Akiyama |
Professor, Tokyo Institute of Technology, Japan |
Massively parallel bioinformatics computing on K-computer, TSUBAME, and Azure: Metagenome analysis and exhaustive protein-protein interaction prediction
[abstract] |
| Jun 21, Tue |
3:00pm |
Gregor Hendel
(via Skype) |
Researcher, Zuse Institute Berlin, Germany |
How to solve Integer Optimization Problems with SCIP
[abstract] |
| 3:35pm |
Yuji Shinano |
Researcher, Zuse Institute Berlin, Germany |
Towards Using over a Million CPU Cores to Solve Previously Unsolved Mixed Integer Programming Problem Instances
[abstract] |
| Apr 20, Wed |
2:00pm |
Jinn-Moon Yang |
Professor, National Chiao Tung University, Taiwan |
NetPharmalogs for drug discovery and applications
[abstract] |
| Apr 14, Thu |
2:00pm |
Colin de la Higuera |
Professor, University of Nantes, France |
Machine learning is about intelligent forgetting
[abstract] |
会場−京都大学化学研究所バイオインフォマティクスセンター CB-207
|
平成27年度 (2015年4月〜2016年3月)
| 日時 |
スピーカー |
所属機関 |
タイトル |
| 2月24日(水) |
2:00pm |
Ryo Yoshinaka |
Assistant Professor, Kyoto University, Japan |
Distributional learning of some context-free languages and beyond
[abstract] |
| 12月17日(木) |
11:00am |
Graziano Chesi |
Associate Professor, The University of Hong Kong, Hong Kong |
Stability and Performance Analysis of 2D Mixed Continuous-Discrete-Time Systems
[abstract] |
| 11月24日(火) |
2:00pm
@CB316 |
Tomoharu Iwata |
Research Scientist, NTT Communication Science Laboratries, Japan |
Unsupervised Cluster Matching for Relational Data
[abstract] |
| 11月12日(金) |
2:00pm |
Wataru Iwasaki |
Associate Professor, University of Tokyo, Japan |
Bioinformatic Approaches for Comprehensive Description of Biological Systems
[abstract] |
| 10月23日(金) |
2:00pm |
Aapo Hyvarinen |
Professor, University of Helsinki, Finland |
Independent component analysis: recent advances
[abstract] |
| 10月20日(火) |
2:00pm |
Samuel Kaski |
Professor, Aalto University, Finland |
Bayesian factorization of multiple data sources
[abstract] |
| 9月15日(木) |
2:00pm |
Jiangning Song |
Senior Research Fellow, Monash University, Australia |
The Predictive Power of Machine Learning Techniques in Data-driven Biomedical Knowledge Discovery: My Structural Bioinformatics Journey
[abstract] |
| 5月28日(木) |
2:00pm |
Pascal Hingamp |
Associate Professor, Aix-Marseille University, France |
First insights from the Tara Oceans global plankton sampling expedition
[abstract] |
| 5月7日(木) |
10:30am |
Inna Kuperstein |
ACSN project manager, Institut Curie, U900 INSERM, Mines Paris Tech, France |
Atlas of Cancer Signaling Network and NaviCell: comprehensive resource and web tool for data analysis and interpretation
[abstract] |
| 5月7日(木) |
11:30am |
Emmanuel Barillot |
Head of Department of Computational Systems Biology of Cancer, Institut Curie, U900 INSERM, Mines Paris Tech, France |
Exploiting synthetic interactions and signaling network modeling to combat cancer
[abstract] |
京 都−京都大学化学研究所バイオインフォマティクスセンター CB-207
東 京−東京大学医科学研究所ヒトゲノム解析センター
平成26年度 (2014年4月〜2015年3月)
| 場所 |
日時 |
スピーカー |
所属機関 |
タイトル |
| 京都 |
3月18日(水) |
3:00pm |
Fabrizio Smeraldi |
Lecturer, Queen Mary, University of London |
On time, complexity and Thermodynamics: some surprising facts about Brownian computing
[abstract] |
| 京都 |
3月18日(水) |
2:00pm |
Fabrizio Smeraldi |
Lecturer, Queen Mary, University of London |
Handling missing features with boosting algorithms for protein-protein interaction prediction
[abstract] |
| 京都 |
3月17日(火) |
11:00am |
Gregory Kucherov |
Professor, CNRS/LIGM Marne-la-Vallée, France |
Efficient index-based filtering for NGS read processing
[abstract] |
| 京都 |
2月6日(金) |
3:00pm |
Emna Ben Abdallah |
PhD student at Ecole Centrale de Nantes, IRCCyN, Nantes, France |
Exhaustive dynamic analysis of Process Hitting models through Answer Set Programming
[abstract] |
| 京都 |
2月6日(金) |
2:00pm |
Morgan Magnin |
JSPS Fellow, National Institute of Informatics, Tokyo, Japan |
Analyzing regulation thanks to a concurrent dynamic framework: the Process Hitting
[abstract] |
| 京都 |
1月7日(水) |
2:00pm |
Makoto Yamada |
Research Scientist, Yahoo! Labs |
Minimum Redundancy Maximum Relevance Feature Selection for
Large and High-dimensional Data
[abstract] |
| 京都 |
9月24日(水) |
2:00pm |
Romain Blanc-Mathieu |
Research associate at Institut Sophia Agrobiotech, INRA, France |
Population Genomics of Ostreococcus tauri: Diversity and Evolution of the Smallest Photosynthetic Eukaryote
[abstract] |
| 京都 |
9月16日(火) |
2:00pm |
Colin de la Higuera |
University of Nantes |
Learning Probabilistic Context-Free Grammars
[abstract] |
| 京都 |
9月2日(火) |
11:00am |
Peter Floderus |
Lund University |
A polynomial to count induced subgraphs quickly
[abstract] |
| 京都 |
7月14日(月) |
2:00pm |
Shin-ichi Morishita |
University of Tokyo |
Novel insights into mid-sized heterozygous structural variations and DNA methylome in a diploid human genome through SMRT sequencing
[abstract] |
| 京都 |
5月29日(木) |
11:00am |
Michael Ng |
Department of Mathematics, Hong Kong Baptist University |
Spectral Clustering for Tensor Data
[abstract] |
| 京都 |
4月3日(木) |
2:00pm |
Maricel G. Kann |
University of Maryland, Baltimore County |
A Protein-Domain Approach for the Analysis of Disease Mutations
[abstract] |
平成25年度 (2013年4月〜2014年3月)
| 場所 |
日時 |
スピーカー |
所属機関 |
タイトル |
| 京都 (CB316) |
3月19日(水) |
2:00pm |
Tetsuo Shibuya |
Associate Professor, Human Genome Center, Institute of Medical Science, University of Tokyo |
de Bruijn Graph Problems
[abstract] |
| 京都 |
3月19日(水) |
11:00am |
Ichiro Takeuchi |
Associate Professor, Nagoya Institute of Technology |
An Algorithmic Framework for Computing Validation
Performance Bounds by Using Suboptimal Models
[abstract] |
| 京都 |
3月18日(火) |
2:00pm |
Takeki Uehara |
Manager, Strategic Development Department, Shionogi & Co., Ltd. |
Application of toxicogenomics for drug toxicity screening
[abstract] |
| 京都 |
12月26日(木) |
11:00am |
Raymond Wan |
School of Life Sciences, The Chinese University of Hong Kong |
Transformations for Compressing Quality Scores of Next Generation Sequencing Data
[abstract] |
| 京都 |
11月21日(木) |
1:30pm |
Marco Cuturi |
Graduate School of Informatics, Kyoto Univ. |
Sinkhorn Distances: Lightspeed Computation of Optimal Transport
[abstract] |
| 京都 |
11月11日(月) |
11:00am |
Hanah Margalit |
The Hebrew University |
The multifaceted impact of post-transcriptional regulation by non-coding RNAs
[abstract] |
| 京都 |
10月18日(金) |
2:00pm |
Tetsuo Shibuya |
The University of Tokyo |
Indexing Protein 3-D Structures for Faster Structural Similarity Queries
[abstract] |
| 京都 |
10月15日(火) |
1:30pm |
Man Yi Yim |
The University of Hong Kong |
Impact of intrinsic biophysical diversity on the activity of spiking neurons
[abstract] |
| 京都 |
10月7日(月) |
1:30pm |
Michal Kolar |
Academy of Sciences of the Czech Republic, Prague |
Graph alignment of protein-protein interaction networks: From
interactions to functional annotation
[abstract] |
| 京都 |
7月19日(金) |
2:00pm |
Hiroto Saigo |
Kyushu Institute of Technology |
Multiple response regression for graph mining
[abstract] |
| 京都 |
7月12日(金) |
2:00pm |
Jean-Philippe.Vert |
Mines ParisTech - Curie Institute |
Flip-Flop: Fast lasso-based isoform prediction from RNA-seq data
[abstract] |
| 京都 |
6月11日(火) |
11:00am |
Toby Dylan Hocking |
Tokyo Institute of Technology |
SegAnnDB: interactive web-based genomic segmentation
[abstract] |
| 京都 |
6月5日(水) |
1:30pm |
Hongmin Cai |
South China University of Technology |
Feature Selection via Local Hyperplane Approximation
[abstract] |
| 京都 |
5月24日(金) |
2:00pm |
Graziano Chesi |
The University of Hong Kong |
Equilibria and Stability Investigation in Genetic Regulatory Networks
[abstract] |
| 京都 |
5月7日(火) |
2:00pm |
Andrzej Lingas |
Lund University, Sweden |
Counting and detecting small subgraphs via equations
[abstract] |
| 京都 |
4月18日(木) |
1:30pm |
Ia Kusradze |
Eliava Institute of Bacteriophages,
Microbiology and Virology |
Characterization of Antibiotic resistant Acinetobacter baumannii
Specific Phages for Creation the Therapeutic-preventive Preparation
[abstract] |
| 京都 |
4月18日(木) |
1:30pm |
Hanaa Hibishy |
Tanta University, Egypt |
Cloning and Functional Characterization of PTPCD2 a Novel Cell Cycle
Related Protein Tyrosine Phosphatase That Regulates Mitotic Exit
[abstract] |
| 京都 |
4月9日(火) |
2:00pm |
Koichi Hirata |
Kyushu Institute of Technology |
Tai mapping hierarchy and variations of tree edit distance
[abstract] |
平成24年度 (2012年4月〜2013年3月)
| 場所 |
日時 |
スピーカー |
所属機関 |
タイトル |
| 京都 |
1月22日(火) |
2:00pm |
Andrew Knyazev |
Mitsubishi Electric Research Laboratories |
Novel data clustering for microarrays and image segmentation
[abstract] |
| 京都 |
12月10日(月) |
1:30pm |
Sylvain Guillemot |
MTA SZTAKI, Hungary |
Constructing agreement supertrees
[abstract] |
| 京都 |
11月1日(木) |
5:00pm |
Limsoon Wong |
School of Computing, National University of Singapore |
A Novel Principle for Childhood ALL Relapse Prediction
[abstract] |
| 京都 |
10月25日(木) |
3:00pm |
Didier Rognan |
Centre national de la recherche scientifique (CNRS), France |
Fingerprinting protein cavities and protein-ligand complexes for drug design
[abstract] |
| 京都 |
9月24日(月) |
11:00am |
Kazuyoshi Ikeda |
EMBL-EBI |
Overview of the ChEMBLdb: A database of drug, lead and target data
[abstract] |
| 京都 |
9月13日(木) |
2:00pm |
Baruch Barzel |
The Center for Complex Network Research at Northeastern University, The Dana Farber Cancer Center at Harvard Medical School Boston, Massachusetts |
Scaling Theory of Network Dynamics: What Can Three Numbers Teach Us about a Complex System ?
[abstract] |
| 京都 |
9月10日(月) |
3:30pm |
Ryohei Fujimaki |
NEC Laboratories America |
Factorized Asymptotic Bayesian Hidden Markov Models
[abstract] |
| 京都 |
7月2日(月) |
11:00am |
Luis Carvalho |
Department of Mathematics & Statistics, Boston University, USA |
Graph-regularized centroid estimation on a hierarchical Bayesian model for Genome-Wide Association Studies
[abstract] |
| 京都 |
5月28日(月) |
11:00am |
Daisuke Kihara |
Department of Biological Sciences/Computer Science, Purdue University, West Lafayette, IN, USA |
Predictions of Structures of Protein Interactions
[abstract] |
| 京都 |
5月23日(水) |
2:30pm |
Jun Ohkubo |
Graduate School of Informatics,Kyoto University |
Counting statistics and related topics
[abstract] |
| 京都 |
4月16日(月) |
11:00am |
Jesper Jansson |
The Hakubi Project at Kyoto University |
Combinatorial Algorithms for Building a Phylogenetic Supertree
[abstract] |
平成23年度 (2011年4月〜2012年3月)
| 場所 |
日時 |
スピーカー |
所属機関 |
タイトル |
| 京都 |
2月14日(火) |
2:00pm |
Hiroyuki Ogata |
Aix-Marseille University |
Giant viruses in marine environments [abstract] |
| 2:45pm |
Pascal Hingamp |
Aix-Marseille University |
What can metagenomics tell us about marine large eukaryotic viruses? Preliminary exploration of TARA -OCEANS genomic data [abstract] |
| 京都 |
1月11日(水) |
11am |
Von-Wun Soo |
Department of Computer Science and Institute of Information Systems and Applications, National Tsing Hua
University, Taiwan |
Identify Drug Co-target to Fight Drug Resistance Based on a Random Walk Model
[abstract] |
| 京都 |
1月6日(金) |
11am |
Jiangning Song |
Department of Biochemistry& Molecular Biology Faculty of Medicine, Monash University, Australia |
Predicting substrate cleavage sites of proteases using machine learning techniques and sequence-derived features
[abstract] |
| 京都 |
12月21日(水) |
10am |
Kiyoko F. Aoki-Kinoshita |
Soka University |
Development of a Multiple Glycan Alignment Tool
[abstract] |
| 京都 |
11月18日(金) |
4pm |
Alexandre Varnek |
Laboratory of Chemoinformatics, University of Strasbourg, France |
Chemical space: design, visualization and navigation
[abstract] |
| 京都 |
10月11日(火) |
11am |
Dmitrij Frishman |
Technische Universitat Munich, Germany |
Exploring the fold space of membrane proteins
[abstract] |
| 京都 |
9月26日(月) |
11am |
Masayuki Karasuyama |
Tokyo Institute of Technology |
Optimal Solution Path Algorithm for Machine Learning:
Analytical Approach to Solving Support Vector Machines
[abstract] |
| 京都 |
9月13日(火) |
2pm |
Huarong Zhou |
Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences
|
Type 2 diabetes, is it an intestinal disease?
[abstract] |
| 京都 |
8月1日(月) |
11am |
Zenmei Ohkubo |
University of Illinois at Urbana-Champaign |
Spontaneous Binding and Insertion of Membrane-Anchoring Proteins Captured by a Highly Mobile Membrane Mimetic (HMMM) Model
[abstract] |
| 京都 |
6月29日(水) |
11am |
Keiko Udaka |
Department of Immunology, Kochi Medical School |
Development of a peptide immunotherapy for malignant tumors [abstract] |
| 京都 |
6月15日(水) |
2pm |
Kengo Sato |
Department of Biosciences and Informatics, Keio University |
Fast and accurate predictions of RNA structures using integer programming [abstract] |
| 京都 |
6月14日(火) |
11am |
Jose Nacher |
Future University-Hakodate |
Discoveries from non-randomness in complex cellular networks and systems [abstract] |
京都
(CB-316) |
6月2日(木) |
11am |
Frantisek Capkovic |
Institute of Informatics, Slovak Academy of Sciences |
Modularity and Supervision in Agents Cooperation [abstract] |
| 京都 |
4月21日(木) |
11am |
Motoaki Kawanabe |
Fraunhofer FIRST and TU Berlin, Germany |
Classifying Visual Objects with many Kernels [abstract] |
平成22年度 (2010年4月〜2011年3月)
| 場所 |
日時 |
スピーカー |
所属機関 |
タイトル |
| 京都 |
2011年
3月8日(火) |
11am |
Shanfeng Zhu |
Fudan University, China |
Efficient Semi-Supervised MEDLINE Document Clustering [abstract] |
| 京都 |
3月7日(月) |
11am |
Mikita Suyama |
Graduate School of Medicine, Kyoto University |
Searching for regulatory sequences of alternative splicing by using genome sequence alignment and RNA-seq data [abstract] |
京都
(CB-316) |
3月1日(火) |
11am |
伊藤真純 |
北海道大学情報科学研究科 |
木構造を利用したアノテーション手法[abstract] |
| 京都 |
2月3日(木) |
11am |
Tadashi Yamamoto |
Department of Structural Pathology, Institute of Nephrology, Graduate School of Medical and Dental Sciences, Niigata University |
Human Proteome Project and Kidney Disease Project[abstract] |
京都
(CB-316) |
12月2日(木) |
1:30pm |
Jiuyong Li |
School of Computer and Information Science, University of South, Australia |
Using data mining methods to discover regulatory roles of microRNA in Data[abstract] |
| 京都 |
11月24日(水) |
11am |
Masashi Sugiyama |
Tokyo Institute of Technology, Japan |
Density Ratio Estimation: A New Versatile Tool for Machine Learning [abstract] |
| 京都 |
11月16日(火) |
4:30pm |
Kiyoshi Asai |
Department of Computational Biology, University of Tokyo |
RNA配列情報解析技術の進展 [abstract] |
| 京都 |
11月11日(木) |
11am |
Atsuyoshi Nakamura |
Graduate School of Information Science and Technology, Hokkaido University |
Algorithms for Finding a Minimum Repetition Representation of a String [abstract] |
| 京都 |
11月5日(金) |
11am |
Luonan Chen |
Key Laboratory of Systems Biology, Chinese Academy of Sciences, China |
Screening Biomolecular Networks Based on High Throughput Data [abstract] |
| 京都 |
10月28日(木) |
11am |
Alexandre Varnek |
Laboratory of Chemoinformatics, UMR 7177 CNRS, University of Strasbourg |
Condensed Graphs of Reaction: an efficient way of reactions mining [abstract] |
| 京都 |
9月24日(金) |
11am |
Marco Cuturi |
Graduate School of Informatics Kyoto University |
Autoregressive Kernels for Multivariate Time Series [abstract] |
| 京都 |
7月23日(金) |
11am |
Ernst-Walter Knapp |
Institute of Chemistry & Biochemistry, Free University of Berlin, Germany |
SPARROW a Protein secondary structure predictor, variations on an old theme [abstract] |
| 京都 |
7月16日(金) |
11am |
Kimmen Sjölander |
Berkeley Phylogenomics Group, University of California, Berkeley |
New methods for functional site identification, orthology prediction and multiple sequence alignment[abstract]
|
| 京都 |
7月1日(木) |
2pm |
Serafim Batzoglou |
Stanford University, Department of Computer Science |
Extracting medical and ancestry information from genomes [abstract] |
平成21年度 (2009年4月〜2010年3月)
| 場所 |
日時 |
スピーカー |
所属機関 |
タイトル |
| 京都 |
3月23日(火) |
2pm |
山本真基 |
東海大学 |
充足可能性問題（ＳＡＴ問題）を解くO(1.234^m)時間厳密アルゴリズム [abstract] |
| 京都 |
3月9日(火) |
2pm |
Narayan Behera |
Centre for Ecological Research, Kyoto University |
An evolutionary data mining algorithm to find the candidate genes from microarray gene expression data [abstract] |
京都
(CB-316) |
3月8日(月) |
11am |
Masaki Kato |
Structural Glycobiology Team, RIKEN Advanced Science Institute |
Bioinformatics for glycobiology
From the viewpoints of wet laboratory [abstract] |
| 京都 |
3月1日(月) |
11am |
Nicolas Wicker |
University of Strasbourg, France |
Sampling problems, from theory to biology [abstract] |
| 京都 |
1月25日(月) |
11am |
Shanfeng Zhu |
Fudan University, China |
Improve the MHC II-peptide binding prediction with ensemble approaches [abstract] |
| 京都 |
12月10日(木) |
2pm |
Ling-Yun Wu |
Institute of Applied Mathematics, Chinese Academy of Sciences, China |
Conditional random patternal gorithm for LOH inference and segmentation [abstract] |
| Yong Wang |
Institute of Applied Mathematics, Chinese Academy of Sciences, China |
Probing the organizational and evolutionary principles of bio-molecularnetworks by subnetworks [abstract] |
| Jiangning Song |
Department of Biochemistry and Molecular Biology, Monash University, Australia |
Characterizing substrate specificity of proteases using machine learning techniques [abstract] |
| 京都 |
11月30日(月) |
11am |
Johann Gasteiger |
University of Erlangen-Nuremberg, Molecular Networks GmbH, Germany |
Multidimensional explorations into biochemical pathways [abstract] |
| 京都 |
11月16日(月) |
11am |
Avraham Melkman |
Ben-Gurion University of the Negev, Israel |
Integrating gene annotations into data analysis [abstract] |
| 京都 |
10月5日(月) |
11am |
Kimihito Ito |
Department of Global Epidemiology, Research Center for Zoonosis Control, Hokkaido University |
Prediction of the mutation of the influenza virus gene [abstract] |
| 京都 |
9月7日(月) |
11am |
Koji Tsuda |
CBRC, AIST, Tokyo |
Mining frequent subgraphs from linear graphs [abstract] |
| 京都 |
7月16日(木) |
1:30pm |
Yong Wang |
Chinese Academy of Sciences |
Probing the regulatory networks by computational models [abstract] |
| 2:30pm |
Zhiping Liu |
Chinese Academy of Sciences, Osaka Sangyo University |
Dynamically dysfunctional protein interactions in the development of Alzheimer's disease [abstract] |
| 京都 |
7月6日(月) |
11am |
Jean-Philippe Vert |
Mines ParisTech, Institut Curie, INSERM U900 |
Global alignment of protein-protein interaction networks by graph matching methods [abstract] |
京都
(CB-316) |
5月20日(水) |
2pm |
Gabriel Valiente |
Technical University of Catalonia, Spain |
Alignment of trees and directed acyclic graphs in computational biology [abstract
] |
京都
(CB-316) |
4月27日(月) |
11am |
中谷 明弘 |
東京大学大学院新領域創成科学研究科 |
KEGG OC: 網羅的なオーソログクラスタの自動生成 [abstract] |
京都
(CB-316) |
4月23日(木) |
1pm |
Katsumi Inoue |
National Institute of Informatics, Japan |
Evaluating abductive hypotheses using an EM algorithm on BDDs [abstract] |
| 1:40pm |
Andrei Doncescu |
LAAS-CNRS, France |
Cancer diagnosis by abductive reasoning [abstract] |
| 京都 |
4月20日(月) |
11am |
See-Kiong Ng |
Institute for Incomm Research, A*STAR, Singapore |
Unraveling the building blocks of protein-protein interaction networks [abstract] |
平成20年度 (2008年4月〜2009年3月)
| 場所 |
日時 |
スピーカー |
所属機関 |
タイトル |
京都
(CB-316) |
2008年
2月23日(月) |
11am |
八杉 悦子 |
東京大学大学院医学系研究科・メタボローム講座 |
日本脂質生化学会のデータベース LipidBank [abstract] |
京都
|
2月2日(月) |
11am |
Shanfeng Zhu |
Fudan University, China |
Enhancing MEDLINE document clustering by Incorporating MeSH semantic similarity [abstract] |
京都
|
1月19日(月) |
11am |
Paul Horton |
Computational Biology Research Center, AIST, Japan |
Mitochondrial β-barrel proteins, an exclusive club? [abstract] |
京都
|
12月22日(月) |
11am |
Hiroyuki Ogata |
CNRS, France |
Host-like genes in giant DNA viruses [abstract] |
京都
|
11月17日(月) |
11am |
Tatiana Tatusova |
NCBI/NLM/NIH |
New protein clusters database at the national center for biotechnology information [abstract] |
京都
|
11月10日(月) |
11am |
Kimmen Sjölander |
University of California, Berkeley |
Boosting biological discovery through phylogenomics [abstract] |
京都
|
10月27日(月) |
11am |
Yoshinobu Igarashi |
National Institute of Biomedical Innovation |
Construction and analysis of a proteolytic event database, cutDB [abstract] |
京都
(CB-316) |
9月24日(水) |
4pm |
Yoshihiro Yamanishi |
Institut Curie, Paris, France |
Prediction of drug-target interaction networks from the integration of chemical and genomic spaces [abstract] |
京都
|
9月1日(月) |
11am |
Takuji Yamada |
EMBL Heidelberg |
Pathway analyses along the genomic data [abstract] |
京都
(CB-316) |
7月25日(金) |
3:30pm |
齊藤 隆文 |
東京農工大学・生物システム応用科学府 |
大規模情報のコンパクトな可視化提示 [abstract] |
京都
(CB-316) |
7月23日(水) |
2pm |
西岡 孝明 |
慶應義塾大学・先端生命科学研究所 |
代謝物質のマススペクトルデータベース Massbank [abstract] |
| 京都 |
7月22日(火) |
11am |
Oliver Ebenhoh |
Max-Planck-Institute for Molecular Plant Physiology |
Modeling the degradation of transitory starch in plant leaves [abstract] |
京都
(CB-316) |
7月11日(金) |
1:30pm |
Bruce Conklin |
Gladstone Institute of Cardiovascular Disease, UCSF |
Pathway-oriented functional genomics using WikiPathways, GenMAPP and stem cell biology [abstract] |
| 京都 |
7月7日(月) |
11am |
Jean-Philippe Vert |
Ecole des Mines de Paris |
Inference of biological networks with supervised machine learning [abstract] |
| 京都 |
6月30日(月) |
11am |
Vo Ngoc Anh |
The University of Melbourne |
Impact-based document ranking [abstract] |
| 京都 |
5月20日(火) |
4:30pm |
堀本 勝久 |
産業技術総合研究所・生命情報工学研究センター |
記号計算による生体ネットワーク動態解析 [abstract] |
| 京都 |
5月12日(月) |
11am |
Hirotada Mori |
Nara Institute of Science and Technology |
Systematic analysis of genetic interaction of Escherichia coli [abstract] |
| 京都 |
4月7日(月) |
11am |
Yukako Tohsato |
College of Information Science and Engineering, Ritsumeikan University |
Metabolic pathway alignment based on compound similarity [abstract] |
平成19年度 (2007年4月〜2008年3月)
| 場所 |
日時 |
スピーカー |
所属機関 |
タイトル |
| 京都 |
2008年
3月10日(月) |
11am |
Koji Tsuda |
Max Planck Institute for Biological Cybernetics |
Enumeration of condition-specific dense modules in protein interaction networks [abstract] |
| 京都 |
2月6日(水) |
11am |
Ruisheng Wang |
Chinese Academy of Science |
Inferring transcriptional interactions and regulator activities from high-throughput data [abstract] |
| 京都 |
1月18日(金) |
2pm |
Oliver Sander |
Max Planck Institute |
Inferring molecular function from local function conservation in sequence and structure space [abstract] |
| 京都 |
2007年
11月21日(水) |
2pm |
田口 良 |
東京大学大学院・医学系研究科 |
脂質メタボローム解析の基盤技術と脂質局在化の制御と肥満、炎症等の病態解析への応用 [abstract] |
| 京都 |
11月5日(月) |
11am |
Nicolas Joannin |
Karolinska Institute |
About RIFINs: from gene family to function, or the complexity of antigenically variable protein families [abstract] |
| 京都 |
10月1日(月) |
11am |
Frederique Lisacek |
Swiss Institute of Bioinformatics |
Proteomics data analysis in clinical applications [abstract] |
| 京都 |
9月25日(火) |
11am |
John Weinstein |
National Cancer Institute |
The Miner Suite and its application to cancer: bioinformatic resources that complement KEGG [abstract] |
| 京都 |
9月10日(月) |
11am |
Kazuharu Arakawa |
Graduate School of Media and Governance, Keio University |
Comprehensive modeling environment for the simulation of whole-cell [abstract] |
| 京都 |
5月14日(月) |
11am |
Koji Tsuda |
Max Planck Institute for Biological Cybernetics |
Mathematical programming methods for learning from structured data [abstract] |
| 京都 |
5月7日(月) |
11am |
Denis Thieffry |
Universitee de la Mediterranee |
Logical modelling of genetic regulatory networks [abstract] |
| 京都 |
4月23日(月) |
11am |
Yang Dai |
University of Illinois at Chicago |
Reconstruction of functional gene networks based on published literature [abstract] |
| 京都 |
4月17日(火) |
1:30pm |
時松 敏明 |
東京大学大学院・新領域創成科学研究科 |
植物オミックス研究のための代謝経路・二次代謝産物データベースの構築 [abstract] |
平成18年度 (2006年4月〜2007年3月)
| 場所 |
日時 |
スピーカー |
所属機関 |
タイトル |
| 京都 |
2007年
3月12日(月) |
11am |
Shin Ishii |
Nara Institute of Science and Technology |
Machine learning approaches to gene expression analyses [abstract] |
| 京都 |
2月8日(木) |
2pm |
Jean-Philippe Vert |
Ecole des Mines de Paris |
Kernel methods in computational biology [abstract] |
| 4pm |
| 京都 |
1月15日(月)
〜16日(火) |
10am |
ケミカルアノテーションワークショップ |
| 横浜 |
2006年
12月17日(日) |
10:30am |
バイオインフォマティクス教育プログラム国際シンポジウム |
| 京都 |
10月23日(月) |
11am |
Ovidiu Radulescu |
Universite de Rennes 1 |
Complex biological systems : hierarchical models, robustness, and qualitativ e modeling [abstract] |
| 京都 |
10月16日(月) |
11am |
Yoshinobu Igarashi |
Burnham Institute for Medical Research |
CutDB - a proteolytic event database [abstract] |
| 京都 |
10月13日(金) |
11am |
Alex J. Smola |
National ICT Australia |
Maximum mean discrepancy for distribution testing [abstract] |
| 京都 |
10月2日(月) |
11am |
Mats Wahlgren |
Karolinska Inst. |
Understanding severe malaria [abstract] |
| 京都 |
9月25日(月) |
11am |
Hisako Ichihara |
Bioinformatics Center, Institute for Chemical Research, Kyoto University |
Positive selection in the CSP-ComD system of streptococcal species [abstract] |
| 京都 |
7月27日(木) |
2pm |
Ron Pinter |
Israel Institute of Technology |
Static and dynamic methods for the analysis of biological networks [abstract] |
| 京都 |
7月10日(月) |
11am |
Ken Ichiro Fukuda |
CBRC |
INOH database and annotation ontologies [abstract] |
| 京都 |
7月3日(月) |
11am |
Daniel Nilsson |
CMB, Programme for Genomics and Bioinformatics, Karolinska Institutet |
Genomic feature identification in trypanosomatid parasites [abstract] |
| 京都 |
6月24日(土) |
10am |
バイオインフォマティクス特別講義 |
| 京都 |
6月19日(月) |
11am |
Claire Gaugain |
Centre de Bio-informatique de Bordeaux, Universite de Bordeaux 2 |
Integration and representation of biological data [abstract] |
| 京都 |
6月12日(月) |
11am |
Jose Carlos Clemente Litran |
JAIST |
Phylogenetic reconstruction from metabolic pathway alignment [abstract] |
| 京都 |
6月9日(金) |
1:30pm |
Tamas Horvath |
Department of Computer Science III, University of Bonn |
Mining and learning from graph structured data [abstract] |
| Gyorgy Turan |
University of Illinois at Chicago, Chicago, USA and Hungarian Academy of Sciences |
Remarks on learning and commonsense reasoning [abstract] |
| 京都 |
5月29日(月) |
11am |
Paul Horton |
CBRC |
Protein subcellular localization prediction with WoLF PSORT [abstract] |
| 京都 |
5月22日(月) |
11am |
有田 正規 |
東京大学大学院・新領域創成科学研究科 |
化合物マススペクトルデータベースの構築 [abstract] |
| 京都 |
5月8日(月) |
11am |
Tatsuo Shibata |
Department of mathematical and life sciences, Hiroshima university |
Network basis of stripes formation and constructive decoding of developmental program [abstract] |
平成17年度 (2005年4月〜2006年3月)
| 場所 |
日時 |
スピーカー |
所属機関 |
タイトル |
| 京都 |
2006年
3月30日(木) |
2pm |
Andrew J. Bordner |
Oak Ridge National Laboratory, USA |
Learning from structure: Predicting protein-protein interfaces and peptide-MHC binding affinities [abstract] |
| 京都 |
3月27日(月) |
11am |
Claus-W. von der Lieth |
German Cancer Research Centre |
The challenges of informatics for high throughput glycomics analysis of disease-associated sugar chains [abstract] |
| 京都 |
3月20日(月) |
11am |
Yoko Ishino |
Graduate School of Science, Hiroshima University |
Mass spectrometry-based expression proteomics and gene annotation of microbes[abstract] |
| 京都 |
3月6日(月) |
11am |
Jun-ichi Imura |
Tokyo Institute of Technology |
Control of hybrid systems and its application to gene regulatory networks [abstract] |
| 京都 |
1月30日(月) |
11am |
Falk Schreiber |
Institute of Plant Genetics and Crop Plant Research Gatersleben |
Visual network analysis for systems biology [abstract] |
| 京都 |
1月23日(月) |
11am |
Kosuke Morikawa |
Institute for Protein Research, Osaka University |
Substrate channeling mechanism as revealed from the crystal structure of a fatty acid beta-oxidation multienzyme complex [abstract] |
| 京都 |
2005年
12月22日(木) |
1pm |
Pierre Baldi |
University of California, Irvine |
Prediction of protein structures on a genomic scale [abstract] |
| 東京 |
12月12日(月) |
11am |
Junichi Watanabe |
Institute of Medical Science, University of Tokyo |
Full-malaria: a database of full-length cDNA from malaria and toxoplasma parasites |
| 京都 |
11月28日(月) |
11am |
廣明 秀一 |
横浜市立大学大学院・国際総合科学研究科 |
NMRを利用した創薬シーズ蛋白質ドメインを発見するための方法論 [ abstract ]
※日本語 |
| 京都 |
11月21日(月) |
11am |
Christian Lemer |
Free University of Brussels |
KEGG2BioPAX - The development of a converter |
| 京都 |
10月17日(月) |
11am |
Akihiro Inokuchi |
IBM Japan Ltd., Tokyo Research Laboratory |
頻出グラフマイニングと化合物データへの応用
[abstract] |
| 京都 |
6月6日(月) |
11am |
Gabriel Valiente |
Technical University of Catalonia |
Efficient validation of metabolic pathway databases [abstract] |
| 京都 |
5月23日(月) |
11am |
Marco Cuturi |
Ecole des Mines de Paris |
The probabilistic approach to kernel methods and its applications to bioinformatics [abstract] |
| 京都 |
5月16日(月) |
4pm |
Luonan Chen |
Osaka Sangyo University |
Local alignment of protein structure by linear programming [abstract] |
| 11am |
Xiang-Sun Zhang |
Academy of Mathematics and Systems Science, Chinese Academy of Sciences |
Deterministic optimization methods for haplotyping problem [abstract] |
| 京都 |
4月26日(火) |
2pm |
Birgit Pils |
Wuerzburg University |
The nature of functional sites |
| 東京 |
4月25日(月) |
11am |
Nozomi Nagano |
CBRC |
EzCatDB: Catalytic-mechanism database: Analysis of enzyme reactions based on structures [abstract] |
| 京都 |
4月11日(月) |
11am |
Daisuke Shibata |
Kazusa DNA Research Institute |
Integration of transcriptional and metabolomic data |
平成16年度 (2004年4月〜2005年3月)
| 場所 |
日時 |
スピーカー |
所属機関 |
タイトル |
| 京都 |
2005年
3月28日(月) |
5pm |
Ramiro Barrantes |
University of Vermont |
UVM Biodesktop: A flexible, secure software system that permits data,
database, and user profile maintainance for biological researchers [abstract] |
| 京都 |
3月28日(月) |
11am |
Hiroshi Nagamochi |
Kyoto University |
One-sided crossing minimization of bipartite graphs [abstract] |
| 京都 |
2月14日(月) |
11am |
Ichigaku Takigawa |
Hokkaido University |
Statistical pattern classification and convex subclass method [abstract] |
| 京都 |
2004年
12月20日(月) |
11am |
Tatiana Tatusova |
NCBI, NLM, NIH |
Microbial genome resources at NCBI [abstract] |
| 京都 |
11月29日(月) |
11am |
Ryo Yoshida |
Institute of Statistical Mathematics |
Transcriptional module-based clustering via mixed factors model [abstract] |
| 京都 |
11月22日(月) |
11am |
Shigeki Mitaku |
Nagoya University |
Studies of physicochemical signals in amino acid sequences
-- Charge distribution of proteins -- [abstract] |
| 京都 |
11月17日(水) |
16pm |
David Liberles |
University of Bergen, Norway |
Towards an understanding of genome evolution [abstract] |
| 京都 |
11月15日(月) |
11am |
Jean-Philippe Vert |
Ecole des Mines de Paris |
|
| 京都2 |
10月21日(月) |
11am |
Michael K. Ng |
University of Hong Kong |
On discovery of extremely low-dimensional clusters using semi-supervised projected clustering [abstract] |
| 京都2 |
10月4日(月) |
11am |
Fung Siu Leung |
University of Hong Kong |
Building genetic networks in gene expression patterns |
| 京都2 |
9月13日(月) |
11am |
Tadashi Kadowaki |
Kyoto University Graduate School of Pharmaceutical Sciences |
Finding splicing variants by gene expression data [abstract] |
| 京都2 |
9月6日(月) |
11am |
Hisashi Kashima |
IBM Tokyo Research Laboratory |
A kernel-based approach to sequence labeling problems [abstract] |
| 京都2 |
7月26日(月) |
11am |
Birgit Pils |
Wurzburg University |
Inactive enyzme-homologues find new function in regulatory processes [abstract] |
| 京都2 |
7月15日(木) |
2pm |
Koji Tsuda |
Max Plank Institute for Biological Cybernetics and AIST Computational Biology Research Center |
Learning kernels from biological networks by maximizing entropy [abstract] |
| 京都2 |
6月7日(月) |
11am |
Jian-Qin Liu |
ATR Network Informatics Laboratories |
Kinase computing: exploring computational mechanism by signaling pathways in cells [abstract] |
平成15年度 (2003年4月〜2004年3月)
| 場所 |
日時 |
スピーカー |
所属機関 |
タイトル |
| 京都2 |
2004年
3月15日(月) |
11am |
上田 泰己 |
理研 発生・再生科学総合研究センター |
"Rich-travel-more" mechanism underlying heterogeneous organization of gene expression from E. coli to human [abstract] |
| 京都2 |
2月9日(月) |
11am |
Asa Karlsson Wheelock |
University of California Davis |
Techniques for quantitative in vivo studies of the lung proteome [abstract] |
| 京都2 |
2月2日(月) |
11am |
Elmar Heinzle |
Saarland University, Germany |
Metabolic flux analysis: methods and applications using mass spectrometry |
| 京都2 |
2003年
11月25日(火) |
11am |
Barry Smith |
IFOMIS, University of Leipzig |
What are classes in biology? - a brief introduction of ontology |
| 京都1 |
10月31日(金) |
2pm |
Koji Tsuda |
Max Plank Institute for Biological Cybernetics |
Kernel matrix completion theory and applications to biological data [abstract] |
| 京都2 |
10月27日(月) |
11am |
Jean-Philippe Vert |
Ecole des Mines de Paris |
Kernel methods in bioinformatics: state-of-the-art and future [abstract] |
| 京都1 |
10月24日(金) |
3pm |
渋谷 哲郎 |
日本IBM（株）東京基礎研究所 |
高速配列検索技術とその遺伝子発見への応用 |
| 京都1 |
10月22日(水) |
4pm |
白井 宏樹 |
山之内製薬株式会社 |
ゲノム創薬の基盤整備としてのBioinformatics研究 |
| 京都2 |
10月20日(月) |
11am |
Daisuke Kihara |
Purdue University |
PDB is a covering set of small protein structures [abstract] |
| 京都2 |
10月15日(水) |
11am |
Kyoung Tai No |
Yonsei University |
In silico drug discovery system [abstract] |
| 京都2 |
10月9日(木) |
4pm |
Levchenko Maria |
Orekhovich Inst., Russia |
PASS：化合物の生物活性を予測するコンピューターシステム |
| 京都2 |
9月24日(月) |
11am |
Michael Y. Galperin |
NCBI |
Complete microbial genomes: a long way to complete understanding |
| 京都2 |
8月5日(月) |
11am |
時田 恵一郎 |
大阪大学サイバーメディアセンター |
複雑な生物ネットワークにおける安定性と多様性の維持メカニズム [abstract] |
| 京都2 |
7月14日(月) |
4pm |
Marco Cuturi |
Ecole des Mines de Paris |
A covariance kernel derived from text compression tools [abstract] |
| 東京 |
5月19日(月) |
1pm |
Chris J. Myers |
University of Utah |
Stochastic asychronous circuit analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells |
| 京都2 |
5月12日(月) |
11am |
望月 敦史 |
基礎生物学研究所 |
遺伝子の発現切り替えがもたらすネットワークの一般的性質 [abstract] |
| 京都2 |
4月21日(月) |
11am |
Magnus Halldorson |
University of Iceland |
Design of a marker set for a whole genome scan for cancer [abstract] |
平成14年度 (2002年10月〜2003年3月)
| 場所 |
日時 |
スピーカー |
所属機関 |
タイトル |
| 京都2 |
2003年
2月17日(月) |
11am |
大久保 公策 |
九州大学生体防御医学研究所 |
医学知識をどうやって計算に使うのか？ BOBとresolution matrices [abstract] |
| 京都2 |
2月14日(金) |
11am |
Eric Westhof |
Universite Louis Pasteur, Strasbourg, France |
Classification of non-watson-crick base pairs and recognition of RNA motifs [abstract] |
| 京都2 |
1月30日(木) |
11am |
川嵜 敏祐 |
京都大学薬学部 |
ポストゲノム糖鎖生物学 [abstract] |
| 京都2 |
1月20日(月) |
11am |
佐竹 炎 |
サントリー生有研 |
糖鎖生物学研究：現状と今後の展望 [abstract] |
| 京都2 |
1月6日(月) |
4pm |
渡邊 日出海 |
奈良先端大 |
ゲノム進化解析 [abstract] |
| 京都1 |
2002年
12月6日(金) |
11am |
Ludwig Eichinger |
Universitat zu Koln, Germany |
The dictyostelium genome project -- status and prospects [abstract] |
| 京都1 |
11月18日(月) |
11am |
伊藤 隆司 |
金沢大学がん研究所 |
蛋白質相互作用の系統的解析：カタログ化から機能的解釈へ [abstract] |
| 京都1 |
11月8日(金) |
11am |
Sarah Teichmann |
MRC-LMB, Cambridge, UK |
The evolution of small molecule metabolic enzymes [abstract] |
| 京都1 |
10月28日(月) |
11am |
西川 建 |
遺伝研 生命情報・DDBJ 研究センター |
タンパク質の立体構造予測：研究動向と応用研究など [abstract] |
| 京都1 |
10月15日(火) |
10am |
Susan K. Bromberg |
Medical College of Wisconsin |
Rat Genome Database (RGD): a resource for research |
| 京都1 |
10月7日(月) |
11am |
Athel Cornish-Bowden |
CNRS-Marseille, France |
Metabolic analysis as a tool in drug design [abstract] |
|
|
